Genome Sequence Resource for Elsinoë ampelina, the Causal Organism of Grapevine Anthracnose.
Identifieur interne : 000061 ( Main/Exploration ); précédent : 000060; suivant : 000062Genome Sequence Resource for Elsinoë ampelina, the Causal Organism of Grapevine Anthracnose.
Auteurs : Zhi Li [République populaire de Chine] ; Yanchun Fan ; Pingping Chang [République populaire de Chine] ; Linlin Gao [République populaire de Chine] ; Xiping Wang [République populaire de Chine]Source :
- Molecular plant-microbe interactions : MPMI [ 0894-0282 ] ; 2020.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Ascomycota, Génome fongique.
- microbiologie : Maladies des plantes, Vitis.
- Génomique.
English descriptors
- KwdEn :
- MESH :
- genetics : Ascomycota, Genome, Fungal.
- microbiology : Plant Diseases, Vitis.
- Genomics.
Abstract
Elsinoë ampelina is an ascomycetous fungus that causes grape anthracnose, a potentially devastating disease worldwide. Here, we report a 28.29 Mb high-quality genome sequence of E. ampelina YL-1 that encodes 8,057 predicted protein-coding genes and represents the first sequenced genome assembly of E. ampelina. This study adds to the current genomic resources for the genus Elsinoë and paves the way for research on comparative genomic studies, E. ampelina-grape interactions, and improvement of management strategies.
DOI: 10.1094/MPMI-12-19-0337-A
PubMed: 32013763
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome Sequence Resource for <i>Elsinoë ampelina</i>, the Causal Organism of Grapevine Anthracnose.</title><author><name sortKey="Li, Zhi" sort="Li, Zhi" uniqKey="Li Z" first="Zhi" last="Li">Zhi Li</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology in Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology in Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation><nlm:affiliation>Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University.</nlm:affiliation><wicri:noCountry code="subField">Northwest A&F University</wicri:noCountry></affiliation></author><author><name sortKey="Fan, Yanchun" sort="Fan, Yanchun" uniqKey="Fan Y" first="Yanchun" last="Fan">Yanchun Fan</name><affiliation><nlm:affiliation>College of Forestry, Northwest A&F University.</nlm:affiliation><wicri:noCountry code="subField">Northwest A&F University</wicri:noCountry></affiliation></author><author><name sortKey="Chang, Pingping" sort="Chang, Pingping" uniqKey="Chang P" first="Pingping" last="Chang">Pingping Chang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology in Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology in Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation><nlm:affiliation>Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University.</nlm:affiliation><wicri:noCountry code="subField">Northwest A&F University</wicri:noCountry></affiliation></author><author><name sortKey="Gao, Linlin" sort="Gao, Linlin" uniqKey="Gao L" first="Linlin" last="Gao">Linlin Gao</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology in Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology in Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation><nlm:affiliation>Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University.</nlm:affiliation><wicri:noCountry code="subField">Northwest A&F University</wicri:noCountry></affiliation></author><author><name sortKey="Wang, Xiping" sort="Wang, Xiping" uniqKey="Wang X" first="Xiping" last="Wang">Xiping Wang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology in Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology in Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation><nlm:affiliation>Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University.</nlm:affiliation><wicri:noCountry code="subField">Northwest A&F University</wicri:noCountry></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2020">2020</date><idno type="RBID">pubmed:32013763</idno><idno type="pmid">32013763</idno><idno type="doi">10.1094/MPMI-12-19-0337-A</idno><idno type="wicri:Area/Main/Corpus">000101</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000101</idno><idno type="wicri:Area/Main/Curation">000101</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000101</idno><idno type="wicri:Area/Main/Exploration">000101</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genome Sequence Resource for <i>Elsinoë ampelina</i>, the Causal Organism of Grapevine Anthracnose.</title><author><name sortKey="Li, Zhi" sort="Li, Zhi" uniqKey="Li Z" first="Zhi" last="Li">Zhi Li</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology in Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology in Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation><nlm:affiliation>Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University.</nlm:affiliation><wicri:noCountry code="subField">Northwest A&F University</wicri:noCountry></affiliation></author><author><name sortKey="Fan, Yanchun" sort="Fan, Yanchun" uniqKey="Fan Y" first="Yanchun" last="Fan">Yanchun Fan</name><affiliation><nlm:affiliation>College of Forestry, Northwest A&F University.</nlm:affiliation><wicri:noCountry code="subField">Northwest A&F University</wicri:noCountry></affiliation></author><author><name sortKey="Chang, Pingping" sort="Chang, Pingping" uniqKey="Chang P" first="Pingping" last="Chang">Pingping Chang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology in Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology in Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation><nlm:affiliation>Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University.</nlm:affiliation><wicri:noCountry code="subField">Northwest A&F University</wicri:noCountry></affiliation></author><author><name sortKey="Gao, Linlin" sort="Gao, Linlin" uniqKey="Gao L" first="Linlin" last="Gao">Linlin Gao</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology in Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology in Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation><nlm:affiliation>Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University.</nlm:affiliation><wicri:noCountry code="subField">Northwest A&F University</wicri:noCountry></affiliation></author><author><name sortKey="Wang, Xiping" sort="Wang, Xiping" uniqKey="Wang X" first="Xiping" last="Wang">Xiping Wang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology in Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology in Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation><nlm:affiliation>Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University.</nlm:affiliation><wicri:noCountry code="subField">Northwest A&F University</wicri:noCountry></affiliation></author></analytic><series><title level="j">Molecular plant-microbe interactions : MPMI</title><idno type="ISSN">0894-0282</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Ascomycota (genetics)</term><term>Genome, Fungal (genetics)</term><term>Genomics (MeSH)</term><term>Plant Diseases (microbiology)</term><term>Vitis (microbiology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Ascomycota (génétique)</term><term>Génome fongique (génétique)</term><term>Génomique (MeSH)</term><term>Maladies des plantes (microbiologie)</term><term>Vitis (microbiologie)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Ascomycota</term><term>Genome, Fungal</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Ascomycota</term><term>Génome fongique</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term><term>Vitis</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term><term>Vitis</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genomics</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Génomique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><i>Elsinoë ampelina</i> is an ascomycetous fungus that causes grape anthracnose, a potentially devastating disease worldwide. Here, we report a 28.29 Mb high-quality genome sequence of <i>E. ampelina</i> YL-1 that encodes 8,057 predicted protein-coding genes and represents the first sequenced genome assembly of <i>E. ampelina</i>. This study adds to the current genomic resources for the genus <i>Elsinoë</i> and paves the way for research on comparative genomic studies, <i>E. ampelina</i>-grape interactions, and improvement of management strategies.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">32013763</PMID><DateCompleted><Year>2020</Year><Month>07</Month><Day>13</Day></DateCompleted><DateRevised><Year>2020</Year><Month>07</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0894-0282</ISSN><JournalIssue CitedMedium="Print"><Volume>33</Volume><Issue>4</Issue><PubDate><Year>2020</Year><Month>Apr</Month></PubDate></JournalIssue><Title>Molecular plant-microbe interactions : MPMI</Title><ISOAbbreviation>Mol Plant Microbe Interact</ISOAbbreviation></Journal><ArticleTitle>Genome Sequence Resource for <i>Elsinoë ampelina</i>, the Causal Organism of Grapevine Anthracnose.</ArticleTitle><Pagination><MedlinePgn>576-579</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1094/MPMI-12-19-0337-A</ELocationID><Abstract><AbstractText><i>Elsinoë ampelina</i> is an ascomycetous fungus that causes grape anthracnose, a potentially devastating disease worldwide. Here, we report a 28.29 Mb high-quality genome sequence of <i>E. ampelina</i> YL-1 that encodes 8,057 predicted protein-coding genes and represents the first sequenced genome assembly of <i>E. ampelina</i>. This study adds to the current genomic resources for the genus <i>Elsinoë</i> and paves the way for research on comparative genomic studies, <i>E. ampelina</i>-grape interactions, and improvement of management strategies.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Zhi</ForeName><Initials>Z</Initials><Identifier Source="ORCID">http://orcid.org/0000-0003-4144-0099</Identifier><AffiliationInfo><Affiliation>State Key Laboratory of Crop Stress Biology in Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fan</LastName><ForeName>Yanchun</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>College of Forestry, Northwest A&F University.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chang</LastName><ForeName>Pingping</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Crop Stress Biology in Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gao</LastName><ForeName>Linlin</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Crop Stress Biology in Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Xiping</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Crop Stress Biology in Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A&F University.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>03</Month><Day>03</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Mol Plant Microbe Interact</MedlineTA><NlmUniqueID>9107902</NlmUniqueID><ISSNLinking>0894-0282</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001203" MajorTopicYN="Y">Ascomycota</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016681" MajorTopicYN="Y">Genome, Fungal</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D023281" MajorTopicYN="N">Genomics</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D027843" MajorTopicYN="Y">Vitis</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Elsinoë</Keyword><Keyword MajorTopicYN="N">fungal pathogenesis</Keyword><Keyword MajorTopicYN="N">genome</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>2</Month><Day>6</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>7</Month><Day>14</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>2</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">32013763</ArticleId><ArticleId IdType="doi">10.1094/MPMI-12-19-0337-A</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><noCountry><name sortKey="Fan, Yanchun" sort="Fan, Yanchun" uniqKey="Fan Y" first="Yanchun" last="Fan">Yanchun Fan</name></noCountry><country name="République populaire de Chine"><noRegion><name sortKey="Li, Zhi" sort="Li, Zhi" uniqKey="Li Z" first="Zhi" last="Li">Zhi Li</name></noRegion><name sortKey="Chang, Pingping" sort="Chang, Pingping" uniqKey="Chang P" first="Pingping" last="Chang">Pingping Chang</name><name sortKey="Gao, Linlin" sort="Gao, Linlin" uniqKey="Gao L" first="Linlin" last="Gao">Linlin Gao</name><name sortKey="Wang, Xiping" sort="Wang, Xiping" uniqKey="Wang X" first="Xiping" last="Wang">Xiping Wang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/GrapevineDiseaseV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000061 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000061 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= GrapevineDiseaseV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:32013763
|texte= Genome Sequence Resource for Elsinoë ampelina, the Causal Organism of Grapevine Anthracnose.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:32013763" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a GrapevineDiseaseV1
| This area was generated with Dilib version V0.6.37. |  |